The main benefit of this scheme is that PRESENCE does not have to read the entire output of each model when starting, or retrieving a model. Also, all model output files and AIC table are backed-up to a zip-file when exiting the program. Up to 5 older copies of the zip-file are retained in case a model is accidentally deleted.
Ver 13.46 (22Feb2023) - fix 2sp stacked input Ver 13.45 (16Feb2023) - repl ran(seed) with Random() in some funcs Ver 13.46 (22Feb2023) - fix 2sp stacked input Ver 13.45 (16Feb2023) - repl ran(seed) with Random() in some funcs Ver 13.45 (16Feb2023) - repl ran(seed) with Random() in some funcs Ver 13.45 (16Feb2023) - repl ran(seed) with Random() in some funcs Ver 13.45 (16Feb2023) - repl ran(seed) with Random() in some funcs Ver 13.42 (26Oct2022) - add derived parms for 2sp model Ver 13.35 (06May2022) - fix output when constraints are specifiedIn RPresence, del beta cols in DM all=0 Ver 13.27 (18Mar2022) - In RPresence, del beta cols in DM all=0 Ver 13.20 (20Jan2022) - cleaned up unnecessary files in setup file Ver 13.19 (11Jan2022) - added derived parm output to 2sp model Ver 13.42 (26Oct2022) - add derived parms for 2sp model Ver 13.35 (06May2022) - fix output when constraints are specifiedIn RPresence, del beta cols in DM all=0 Ver 13.27 (18Mar2022) - In RPresence, del beta cols in DM all=0 Ver 13.20 (20Jan2022) - cleaned up unnecessary files in setup file Ver 13.19 (11Jan2022) - added derived parm output to 2sp model Ver 13.42 (26Oct2022) - add derived parms for 2sp model Ver 13.35 (06May2022) - fix output when constraints are specifiedIn RPresence, del beta cols in DM all=0 Ver 13.27 (18Mar2022) - In RPresence, del beta cols in DM all=0 Ver 13.20 (20Jan2022) - cleaned up unnecessary files in setup file Ver 13.19 (11Jan2022) - added derived parm output to 2sp model Ver 13.42 (26Oct2022) - add derived parms for 2sp model Ver 13.35 (06May2022) - fix output when constraints are specifiedIn RPresence, del beta cols in DM all=0 Ver 13.27 (18Mar2022) - In RPresence, del beta cols in DM all=0 Ver 13.20 (20Jan2022) - cleaned up unnecessary files in setup file Ver 13.19 (11Jan2022) - added derived parm output to 2sp model Ver 13.42 (26Oct2022) - add derived parms for 2sp model Ver 13.35 (06May2022) - fix output when constraints are specifiedIn RPresence, del beta cols in DM all=0 Ver 13.27 (18Mar2022) - In RPresence, del beta cols in DM all=0 Ver 13.20 (20Jan2022) - cleaned up unnecessary files in setup file Ver 13.19 (11Jan2022) - added derived parm output to 2sp model Ver 13.35 (06May2022) - fix output when constraints are specifiedIn RPresence, del beta cols in DM all=0 Ver 13.27 (18Mar2022) - In RPresence, del beta cols in DM all=0 Ver 13.20 (20Jan2022) - cleaned up unnecessary files in setup file Ver 13.19 (11Jan2022) - added derived parm output to 2sp model Ver 13.35 (06May2022) - fix output when constraints are specifiedIn RPresence, del beta cols in DM all=0 Ver 13.27 (18Mar2022) - In RPresence, del beta cols in DM all=0 Ver 13.20 (20Jan2022) - cleaned up unnecessary files in setup file Ver 13.19 (11Jan2022) - added derived parm output to 2sp model Ver 13.35 (06May2022) - fix output when constraints are specifiedIn RPresence, del beta cols in DM all=0 Ver 13.27 (18Mar2022) - In RPresence, del beta cols in DM all=0 Ver 13.20 (20Jan2022) - cleaned up unnecessary files in setup file Ver 13.19 (11Jan2022) - added derived parm output to 2sp model Ver 13.35 (06May2022) - fix output when constraints are specifiedIn RPresence, del beta cols in DM all=0 Ver 13.27 (18Mar2022) - In RPresence, del beta cols in DM all=0 Ver 13.20 (20Jan2022) - cleaned up unnecessary files in setup file Ver 13.19 (11Jan2022) - added derived parm output to 2sp model Ver 13.35 (06May2022) - fix output when constraints are specifiedIn RPresence, del beta cols in DM all=0 Ver 13.27 (18Mar2022) - In RPresence, del beta cols in DM all=0 Ver 13.20 (20Jan2022) - cleaned up unnecessary files in setup file Ver 13.19 (11Jan2022) - added derived parm output to 2sp model Ver 13.27 (18Mar2022) - In RPresence, del beta cols in DM all=0 Ver 13.20 (20Jan2022) - cleaned up unnecessary files in setup file Ver 13.19 (11Jan2022) - added derived parm output to 2sp model Ver 13.20 (20Jan2022) - cleaned up unnecessary files in setup file Ver 13.19 (11Jan2022) - added derived parm output to 2sp model Ver 13.20 (20Jan2022) - cleaned up unnecessary files in setup file Ver 13.19 (11Jan2022) - added derived parm output to 2sp model Ver 13.18 (03Dec2021) - Add MacKenzie alpha param to 2sp model Ver 13.17 (25Oct2021) - fix multi-season multi-state model Ver 13.16 (20Oct2021) - Add dyn.occ 2nd parm to RPresence Ver 13.15 (182Oct2021) - fix gof bug (gof not run in Presence) Ver 13.14 (12Oct2021) - Increase max cov name length from 64 to 64000 Ver 13.13 (30Aug2021) - fix bug in RPresence 2sp model reversed psiBA, psiBa Ver 13.12 (11Aug2021) - fix bug in RPresence 2sp model output of real psiBA estimates Ver 13.11 (31Mar2021) - make 2sp model print all phis Ver 13.10 (05Jan2021) - fix error in multi-season spatial-dep model Ver 13.18 (03Dec2021) - Add MacKenzie alpha param to 2sp model Ver 13.17 (25Oct2021) - fix multi-season multi-state model Ver 13.16 (20Oct2021) - Add dyn.occ 2nd parm to RPresence Ver 13.15 (182Oct2021) - fix gof bug (gof not run in Presence) Ver 13.14 (12Oct2021) - Increase max cov name length from 64 to 64000 Ver 13.13 (30Aug2021) - fix bug in RPresence 2sp model reversed psiBA, psiBa Ver 13.12 (11Aug2021) - fix bug in RPresence 2sp model output of real psiBA estimates Ver 13.11 (31Mar2021) - make 2sp model print all phis Ver 13.10 (05Jan2021) - fix error in multi-season spatial-dep model Ver 13.17 (25Oct2021) - fix multi-season multi-state model Ver 13.16 (20Oct2021) - Add dyn.occ 2nd parm to RPresence Ver 13.15 (182Oct2021) - fix gof bug (gof not run in Presence) Ver 13.14 (12Oct2021) - Increase max cov name length from 64 to 64000 Ver 13.13 (30Aug2021) - fix bug in RPresence 2sp model reversed psiBA, psiBa Ver 13.12 (11Aug2021) - fix bug in RPresence 2sp model output of real psiBA estimates Ver 13.11 (31Mar2021) - make 2sp model print all phis Ver 13.10 (05Jan2021) - fix error in multi-season spatial-dep model Ver 13.16 (20Oct2021) - Add dyn.occ 2nd parm to RPresence Ver 13.15 (182Oct2021) - fix gof bug (gof not run in Presence) Ver 13.14 (12Oct2021) - Increase max cov name length from 64 to 64000 Ver 13.13 (30Aug2021) - fix bug in RPresence 2sp model reversed psiBA, psiBa Ver 13.12 (11Aug2021) - fix bug in RPresence 2sp model output of real psiBA estimates Ver 13.11 (31Mar2021) - make 2sp model print all phis Ver 13.10 (05Jan2021) - fix error in multi-season spatial-dep model Ver 13.16 (20Oct2021) - Add dyn.occ 2nd parm to RPresence Ver 13.15 (182Oct2021) - fix gof bug (gof not run in Presence) Ver 13.14 (12Oct2021) - Increase max cov name length from 64 to 64000 Ver 13.13 (30Aug2021) - fix bug in RPresence 2sp model reversed psiBA, psiBa Ver 13.12 (11Aug2021) - fix bug in RPresence 2sp model output of real psiBA estimates Ver 13.11 (31Mar2021) - make 2sp model print all phis Ver 13.10 (05Jan2021) - fix error in multi-season spatial-dep model Ver 13.14 (12Oct2021) - Increase max cov name length from 64 to 64000 Ver 13.13 (30Aug2021) - fix bug in RPresence 2sp model reversed psiBA, psiBa Ver 13.12 (11Aug2021) - fix bug in RPresence 2sp model output of real psiBA estimates Ver 13.11 (31Mar2021) - make 2sp model print all phis Ver 13.10 (05Jan2021) - fix error in multi-season spatial-dep model Ver 13.14 (12Oct2021) - Increase max cov name length from 64 to 64000 Ver 13.13 (30Aug2021) - fix bug in RPresence 2sp model reversed psiBA, psiBa Ver 13.12 (11Aug2021) - fix bug in RPresence 2sp model output of real psiBA estimates Ver 13.11 (31Mar2021) - make 2sp model print all phis Ver 13.10 (05Jan2021) - fix error in multi-season spatial-dep model Ver 13.13 (30Aug2021) - fix bug in RPresence 2sp model reversed psiBA, psiBa Ver 13.12 (11Aug2021) - fix bug in RPresence 2sp model output of real psiBA estimates Ver 13.11 (31Mar2021) - make 2sp model print all phis Ver 13.10 (05Jan2021) - fix error in multi-season spatial-dep model Ver 13.12 (11Aug2021) - fix bug in RPresence 2sp model output of real psiBA estimates Ver 13.11 (31Mar2021) - make 2sp model print all phis Ver 13.10 (05Jan2021) - fix error in multi-season spatial-dep model Ver 13.12 (11Aug2021) - fix bug in 2sp model output of real psiBA estimates Ver 13.11 (31Mar2021) - make 2sp model print all phis Ver 13.10 (05Jan2021) - fix error in multi-season spatial-dep model Ver 13.11 (31Mar2021) - make 2sp model print all phis Ver 13.10 (05Jan2021) - fix error in multi-season spatial-dep model Ver 13.10 (05Jan2021) - fix error in multi-season spatial-dep model Ver 13.5 (05Jun2020) - fix error in seasonal covariates for p1,p2 in RPresence Ver 13.4 (05Jun2020) - fix error in seasonal covariates for Cpsi,CR in RPresence Ver 13.1 (14May2020) - recompile RPrsence for R 4.0.0 Ver 12.43 (21Apr2020) - fix Nichols/Royal models in Presence GUI Ver 12.42 (14Apr2020) - fix do.4 model in RPresence Ver 12.41 (07Apr2020) - minor misc updates Ver 12.40 (31Mar2020) - modified limit on warnings about missing det/cov data Ver 12.39 (05Mar2020) - modified do.ms.2 model in RPresence, fix bug in cpsi output for mult-season model. Ver 12.38 (07Feb2020) - add seasonal cpsi to multi-season model. Ver 12.37 (03Jan2020) - fix MS/DO RPres model. Ver 13.5 (05Jun2020) - fix error in seasonal covariates for p1,p2 in RPresence Ver 13.4 (05Jun2020) - fix error in seasonal covariates for Cpsi,CR in RPresence Ver 13.1 (14May2020) - recompile RPrsence for R 4.0.0 Ver 12.43 (21Apr2020) - fix Nichols/Royal models in Presence GUI Ver 12.42 (14Apr2020) - fix do.4 model in RPresence Ver 12.41 (07Apr2020) - minor misc updates Ver 12.40 (31Mar2020) - modified limit on warnings about missing det/cov data Ver 12.39 (05Mar2020) - modified do.ms.2 model in RPresence, fix bug in cpsi output for mult-season model. Ver 12.38 (07Feb2020) - add seasonal cpsi to multi-season model. Ver 12.37 (03Jan2020) - fix MS/DO RPres model. Ver 13.5 (05Jun2020) - fix error in seasonal covariates for p1,p2 in RPresence Ver 13.4 (05Jun2020) - fix error in seasonal covariates for Cpsi,CR in RPresence Ver 13.1 (14May2020) - recompile RPrsence for R 4.0.0 Ver 12.43 (21Apr2020) - fix Nichols/Royal models in Presence GUI Ver 12.42 (14Apr2020) - fix do.4 model in RPresence Ver 12.41 (07Apr2020) - minor misc updates Ver 12.40 (31Mar2020) - modified limit on warnings about missing det/cov data Ver 12.39 (05Mar2020) - modified do.ms.2 model in RPresence, fix bug in cpsi output for mult-season model. Ver 12.38 (07Feb2020) - add seasonal cpsi to multi-season model. Ver 12.37 (03Jan2020) - fix MS/DO RPres model. Ver 13.4 (05Jun2020) - fix error in seasonal covariates for Cpsi,CR in RPresence Ver 13.1 (14May2020) - recompile RPrsence for R 4.0.0 Ver 12.43 (21Apr2020) - fix Nichols/Royal models in Presence GUI Ver 12.42 (14Apr2020) - fix do.4 model in RPresence Ver 12.41 (07Apr2020) - minor misc updates Ver 12.40 (31Mar2020) - modified limit on warnings about missing det/cov data Ver 12.39 (05Mar2020) - modified do.ms.2 model in RPresence, fix bug in cpsi output for mult-season model. Ver 12.38 (07Feb2020) - add seasonal cpsi to multi-season model. Ver 12.37 (03Jan2020) - fix MS/DO RPres model. Ver 13.1 (14May2020) - recompile RPrsence for R 4.0.1 Ver 12.43 (21Apr2020) - fix Nichols/Royal models in Presence GUI Ver 12.42 (14Apr2020) - fix do.4 model in RPresence Ver 12.41 (07Apr2020) - minor misc updates Ver 12.40 (31Mar2020) - modified limit on warnings about missing det/cov data Ver 12.39 (05Mar2020) - modified do.ms.2 model in RPresence, fix bug in cpsi output for mult-season model. Ver 12.38 (07Feb2020) - add seasonal cpsi to multi-season model. Ver 12.37 (03Jan2020) - fix MS/DO RPres model. Ver 12.43 (21MApr2020) - fix Nichols/Royal models in Presence GUI Ver 12.42 (14MApr2020) - fix do.4 model in RPresence Ver 12.41 (07MApr2020) - minor misc updates Ver 12.40 (31Mar2020) - modified limit on warnings about missing det/cov data Ver 12.39 (05Mar2020) - modified do.ms.2 model in RPresence, fix bug in cpsi output for mult-season model. Ver 12.38 (07Feb2020) - add seasonal cpsi to multi-season model. Ver 12.37 (03Jan2020) - fix MS/DO RPres model. Ver 12.42 (14MApr2020) - fix do.4 model in RPresence Ver 12.41 (07MApr2020) - minor misc updates Ver 12.40 (31Mar2020) - modified limit on warnings about missing det/cov data Ver 12.39 (05Mar2020) - modified do.ms.2 model in RPresence, fix bug in cpsi output for mult-season model. Ver 12.38 (07Feb2020) - add seasonal cpsi to multi-season model. Ver 12.37 (03Jan2020) - fix MS/DO RPres model. Ver 12.41 (07MApr2020) - minor misc updates Ver 12.40 (31Mar2020) - modified limit on warnings about missing det/cov data Ver 12.39 (05Mar2020) - modified do.ms.2 model in RPresence, fix bug in cpsi output for mult-season model. Ver 12.38 (07Feb2020) - add seasonal cpsi to multi-season model. Ver 12.37 (03Jan2020) - fix MS/DO RPres model. Ver 12.40 (31Mar2020) - modified limit on warnings about missing det/cov data Ver 12.39 (05Mar2020) - modified do.ms.2 model in RPresence, fix bug in cpsi output for mult-season model. Ver 12.38 (07Feb2020) - add seasonal cpsi to multi-season model. Ver 12.37 (03Jan2020) - fix MS/DO RPres model. Ver 12.40 (31Mar2020) - modified limit on warnings about missing det/cov data Ver 12.39 (05Mar2020) - modified do.ms.2 model in RPresence, fix bug in cpsi output for mult-season model. Ver 12.38 (07Feb2020) - add seasonal cpsi to multi-season model. Ver 12.37 (03Jan2020) - fix MS/DO RPres model. Ver 12.39 (05Mar2020) - modified do.ms.2 model in RPresence, fix bug in cpsi output for mult-season model. Ver 12.38 (07Feb2020) - add seasonal cpsi to multi-season model. Ver 12.37 (03Jan2020) - fix MS/DO RPres model. Ver 12.39 (05Mar2020) - modified do.ms.2 model in RPresence. Ver 12.38 (07Feb2020) - add seasonal cpsi to multi-season model. Ver 12.37 (03Jan2020) - fix MS/DO RPres model. Ver 12.38 (07Feb2020) - add seasonal cpsi to multi-season model. Ver 12.37 (03Jan2020) - fix MS/DO RPres model. Ver 12.37 (03Jan2020) - fix MS/DO RPres model. Ver 12.37 (03Jan2020) - fix MS/DO RPres model. Ver 12.36 (20Nov2019) - fix gof test for single-season model, change conf.int. in ms mod. Ver 12.35 (05Nov2019) - enable gof test for single-season false-positive model Ver 12.34 (08Oct2019) - fix bug in getparam func Ver 12.32 (11Jul2019) - fix bug output of p for missing data Ver 12.31 (21May2019) - fix bug dynamic 2sp output (gamma) Ver 12.29 (15Apr2019) - fix bug in gof test Ver 12.28 (09Apr2019) - fix import func in RPresence, add multi-threading in Presence Ver 12.26 (16Mar2019) - fix bugs mod-avg, import-proj